Genome Resource of a Hypervirulent Strain LN4 of Xanthomonas oryzae pv. oryzae Causing Bacterial Blight of Rice.
Identifieur interne : 000156 ( Main/Exploration ); précédent : 000155; suivant : 000157Genome Resource of a Hypervirulent Strain LN4 of Xanthomonas oryzae pv. oryzae Causing Bacterial Blight of Rice.
Auteurs : Zhengyin Xu [République populaire de Chine] ; Sai Wang [République populaire de Chine] ; Liang Liu [République populaire de Chine] ; Yangyang Yang [République populaire de Chine] ; Bo Zhu [République populaire de Chine] ; Lifang Zou [République populaire de Chine] ; Gongyou Chen [République populaire de Chine]Source :
- Plant disease [ 0191-2917 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical : Transcription Activator-Like Effectors.
- genetics : Xanthomonas.
- Oryza, Plant Diseases.
Abstract
Xanthomonas oryzae pv. oryzae is the causative agent of bacterial blight of rice and causes severe harvest loss and challenges to a stable food supply globally. In this study, a hypervirulent strain, LN4, compatible in rice varieties carrying Xa3, Xa4, xa13, and xa25 resistance genes, was used to generate DNA for nanopore sequencing. After assembly, the genome comprises a single chromosome of 5,012,583 bp, consisting of a total of 6,700 predicted coding sequences. Seventeen transcription activator-like effectors (TALEs) were encoded in the genome, of which two (Tal7 and Tal6c) were major TALEs. The approach and genome data provide information for the discovery of new virulence effectors and understanding of the virulence mechanism of TALEs in rice.
DOI: 10.1094/PDIS-12-19-2724-A
PubMed: 32897843
Affiliations:
Links toward previous steps (curation, corpus...)
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Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Liang" sort="Liu, Liang" uniqKey="Liu L" first="Liang" last="Liu">Liang Liu</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Yangyang" sort="Yang, Yangyang" uniqKey="Yang Y" first="Yangyang" last="Yang">Yangyang Yang</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Bo" sort="Zhu, Bo" uniqKey="Zhu B" first="Bo" last="Zhu">Bo Zhu</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République 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Chen</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32897843</idno><idno type="pmid">32897843</idno><idno type="doi">10.1094/PDIS-12-19-2724-A</idno><idno type="wicri:Area/Main/Corpus">000114</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000114</idno><idno type="wicri:Area/Main/Curation">000114</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000114</idno><idno type="wicri:Area/Main/Exploration">000114</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome Resource of a Hypervirulent Strain LN4 of <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Causing Bacterial Blight of Rice.</title><author><name sortKey="Xu, Zhengyin" sort="Xu, Zhengyin" uniqKey="Xu Z" first="Zhengyin" last="Xu">Zhengyin Xu</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Sai" sort="Wang, Sai" uniqKey="Wang S" first="Sai" last="Wang">Sai Wang</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Liang" sort="Liu, Liang" uniqKey="Liu L" first="Liang" last="Liu">Liang Liu</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Yangyang" sort="Yang, Yangyang" uniqKey="Yang Y" first="Yangyang" last="Yang">Yangyang Yang</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Bo" sort="Zhu, Bo" uniqKey="Zhu B" first="Bo" last="Zhu">Bo Zhu</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Zou, Lifang" sort="Zou, Lifang" uniqKey="Zou L" first="Lifang" last="Zou">Lifang Zou</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Gongyou" sort="Chen, Gongyou" uniqKey="Chen G" first="Gongyou" last="Chen">Gongyou Chen</name><affiliation wicri:level="1"><nlm:affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240</wicri:regionArea><wicri:noRegion>Shanghai 200240</wicri:noRegion></affiliation></author></analytic><series><title level="j">Plant disease</title><idno type="ISSN">0191-2917</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Oryza (MeSH)</term><term>Plant Diseases (MeSH)</term><term>Transcription Activator-Like Effectors (MeSH)</term><term>Xanthomonas (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Effecteurs de type activateur de transcription (MeSH)</term><term>Maladies des plantes (MeSH)</term><term>Oryza (MeSH)</term><term>Xanthomonas (génétique)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Transcription Activator-Like Effectors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Xanthomonas</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Xanthomonas</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Oryza</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Effecteurs de type activateur de transcription</term><term>Maladies des plantes</term><term>Oryza</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Xanthomonas oryzae</i> pv. <i>oryzae</i> is the causative agent of bacterial blight of rice and causes severe harvest loss and challenges to a stable food supply globally. In this study, a hypervirulent strain, LN4, compatible in rice varieties carrying <i>Xa3</i>, <i>Xa4</i>, <i>xa13</i>, and <i>xa25</i> resistance genes, was used to generate DNA for nanopore sequencing. After assembly, the genome comprises a single chromosome of 5,012,583 bp, consisting of a total of 6,700 predicted coding sequences. Seventeen transcription activator-like effectors (TALEs) were encoded in the genome, of which two (Tal7 and Tal6c) were major TALEs. The approach and genome data provide information for the discovery of new virulence effectors and understanding of the virulence mechanism of TALEs in rice.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">32897843</PMID><DateCompleted><Year>2020</Year><Month>11</Month><Day>03</Day></DateCompleted><DateRevised><Year>2020</Year><Month>11</Month><Day>03</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0191-2917</ISSN><JournalIssue CitedMedium="Print"><Volume>104</Volume><Issue>11</Issue><PubDate><Year>2020</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Plant disease</Title><ISOAbbreviation>Plant Dis</ISOAbbreviation></Journal><ArticleTitle>Genome Resource of a Hypervirulent Strain LN4 of <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Causing Bacterial Blight of Rice.</ArticleTitle><Pagination><MedlinePgn>2764-2767</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/PDIS-12-19-2724-A</ELocationID><Abstract><AbstractText><i>Xanthomonas oryzae</i> pv. <i>oryzae</i> is the causative agent of bacterial blight of rice and causes severe harvest loss and challenges to a stable food supply globally. In this study, a hypervirulent strain, LN4, compatible in rice varieties carrying <i>Xa3</i>, <i>Xa4</i>, <i>xa13</i>, and <i>xa25</i> resistance genes, was used to generate DNA for nanopore sequencing. After assembly, the genome comprises a single chromosome of 5,012,583 bp, consisting of a total of 6,700 predicted coding sequences. Seventeen transcription activator-like effectors (TALEs) were encoded in the genome, of which two (Tal7 and Tal6c) were major TALEs. The approach and genome data provide information for the discovery of new virulence effectors and understanding of the virulence mechanism of TALEs in rice.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Zhengyin</ForeName><Initials>Z</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9437-7033</Identifier><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Sai</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Liang</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Yangyang</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Bo</ForeName><Initials>B</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5740-2663</Identifier><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zou</LastName><ForeName>Lifang</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Gongyou</ForeName><Initials>G</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-1979-2880</Identifier><AffiliationInfo><Affiliation>School of Agriculture and Biology/State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai 200240, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Dis</MedlineTA><NlmUniqueID>9882809</NlmUniqueID><ISSNLinking>0191-2917</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000071336">Transcription Activator-Like Effectors</NameOfSubstance></Chemical></ChemicalList><SupplMeshList><SupplMeshName Type="Organism" UI="C000638477">Xanthomonas oryzae</SupplMeshName></SupplMeshList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D012275" MajorTopicYN="Y">Oryza</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000071336" MajorTopicYN="N">Transcription Activator-Like Effectors</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014974" MajorTopicYN="Y">Xanthomonas</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">TALE</Keyword><Keyword MajorTopicYN="N">Xanthomonas oryzae pv. oryzae</Keyword><Keyword MajorTopicYN="N">genome</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>9</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>11</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>9</Month><Day>8</Day><Hour>17</Hour><Minute>11</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32897843</ArticleId><ArticleId IdType="doi">10.1094/PDIS-12-19-2724-A</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Xu, Zhengyin" sort="Xu, Zhengyin" uniqKey="Xu Z" first="Zhengyin" last="Xu">Zhengyin Xu</name></noRegion><name sortKey="Chen, Gongyou" sort="Chen, Gongyou" uniqKey="Chen G" first="Gongyou" last="Chen">Gongyou Chen</name><name sortKey="Liu, Liang" sort="Liu, Liang" uniqKey="Liu L" first="Liang" last="Liu">Liang Liu</name><name sortKey="Wang, Sai" sort="Wang, Sai" uniqKey="Wang S" first="Sai" last="Wang">Sai Wang</name><name sortKey="Yang, Yangyang" sort="Yang, Yangyang" uniqKey="Yang Y" first="Yangyang" last="Yang">Yangyang Yang</name><name sortKey="Zhu, Bo" sort="Zhu, Bo" uniqKey="Zhu B" first="Bo" last="Zhu">Bo Zhu</name><name sortKey="Zou, Lifang" sort="Zou, Lifang" uniqKey="Zou L" first="Lifang" last="Zou">Lifang Zou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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